Varapp
About Varapp
What is Varapp ?
Motivation
Use cases
Varapp is not...
How can I try it?
Reference
Contributing
Future plans
Data preparation
Input format
Annotation
Variants databases
Manually
Automated pipeline
Start using the app
Add a database access to a user
Installation
Install varapp
Create the database
Serve the app
Add more data
Install the web interface
Production setup
Serve with Apache and mod_wsgi
Production settings
Apache configuration
Using HTTPS (SSL)
Dependencies
Apache
MySQL
SMTP server (emails)
Redis
Python 3
Developer notes
Backend management
Build the frontend from source
Database schema
Table “Roles”
Table “People”
Table “Users”
Table “VariantsDb”
Table “DbAccess”
Table “Preferences”
Table “Annotation”
Table “Bookmarks”
Table “History”
Serving BAM files for IGV view
The quick way, with Apache
A more secure way
Updating Varapp
Troubleshooting
Users’ manual
Filters panel
Genomic scenarios
Variants table
Interpreting the genotypes
The lookup window
Sharing, and the usage of bookmarks
Viewing read alignments
Samples selection
Credits
Contact
Varapp
Docs
»
Welcome to Varapp’s documentation!
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Welcome to Varapp’s documentation!
¶
Updated last: 24th August 2016
Contents
¶
About Varapp
What is Varapp ?
How can I try it?
Reference
Contributing
Future plans
Data preparation
Input format
Annotation
Variants databases
Start using the app
Installation
Install varapp
Production setup
Dependencies
Developer notes
Database schema
Serving BAM files for IGV view
Updating Varapp
Troubleshooting
Users’ manual
Filters panel
Variants table
Samples selection
Credits
Contact