Varapp
  • About Varapp
    • What is Varapp ?
      • Motivation
      • Use cases
      • Varapp is not...
    • How can I try it?
    • Reference
    • Contributing
    • Future plans
  • Data preparation
    • Input format
    • Annotation
    • Variants databases
      • Manually
      • Automated pipeline
    • Start using the app
      • Add a database access to a user
  • Installation
    • Install varapp
      • Create the database
      • Serve the app
      • Add more data
      • Install the web interface
    • Production setup
      • Serve with Apache and mod_wsgi
      • Production settings
      • Apache configuration
      • Using HTTPS (SSL)
    • Dependencies
      • Apache
      • MySQL
      • SMTP server (emails)
      • Redis
      • Python 3
    • Developer notes
      • Backend management
      • Build the frontend from source
    • Database schema
      • Table “Roles”
      • Table “People”
      • Table “Users”
      • Table “VariantsDb”
      • Table “DbAccess”
      • Table “Preferences”
      • Table “Annotation”
      • Table “Bookmarks”
      • Table “History”
    • Serving BAM files for IGV view
      • The quick way, with Apache
      • A more secure way
    • Updating Varapp
    • Troubleshooting
  • Users’ manual
    • Filters panel
      • Genomic scenarios
    • Variants table
      • Interpreting the genotypes
      • The lookup window
      • Sharing, and the usage of bookmarks
      • Viewing read alignments
    • Samples selection
  • Credits
  • Contact
 
Varapp
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  • Welcome to Varapp’s documentation!
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Welcome to Varapp’s documentation!¶

Updated last: 24th August 2016

Contents¶

  • About Varapp
    • What is Varapp ?
    • How can I try it?
    • Reference
    • Contributing
    • Future plans
  • Data preparation
    • Input format
    • Annotation
    • Variants databases
    • Start using the app
  • Installation
    • Install varapp
    • Production setup
    • Dependencies
    • Developer notes
    • Database schema
    • Serving BAM files for IGV view
    • Updating Varapp
    • Troubleshooting
  • Users’ manual
    • Filters panel
    • Variants table
    • Samples selection
  • Credits
  • Contact
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